species:   Fugra
pid:       PID0667
parent:    Fg-HN-milR32
paralog:   
locus:     CM000577.1:7214543-7214828
matures:   ['UCUGGCAUUGUUGUGAUGAA', 'CAUCACGAUAGUGCCAGAAC']
srr:       SRR2970501_1
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.AACM00000000.2_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR2970501_1.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR2970501_1.cram CM000577.1:7214543-7214828

6 out of bounds
13 alignments
7 proper strand
5 stranded perfect matches

        **********************                                                                                                                                                                                                                                 **********************         
ACACUGACGCUCUGGCAUUGUUGUGAUGAAGUAGCGUUUGGCUGGUGUGGGAAAGGGGUUUGGCCAUCCACACUCAAAGUCAAACCUCCAAGGCUCGCCUAUGCGUGGUCCUCCUGCCAUGCGAAAGCGAAAAGCCUUCCCGAAGAAUGGAUCGUGGAAAAUGAGUGCCCAGUCGCAGUUCCUGCCCUCGAUGGUGGGGCUGUACAUGUCGACGCUCAGUUCCAUGGUCCUUUCGACACGGCGCCUUACGGCCAUUUCAUCACGAUAGUGCCAGAACGUUGGUGUU
(((((((((.((((((((((((((((((((((.((((..((((.((((((((..((((((((((..............))))))))))..((((((((...((((((((......))))))))...))))...))))))))...(((.(((((((((((..(((((((.((((.((((((((.(((......))))))))))))).))..).)))))).))))))))))).))).)))).).)))..)).)).)))))))))))))))))))))).))))))))).
----------UCUGGCAUUGUUGUGAUGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=5 c
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUCACGAUAGUGCCAGAAC--------- l=20 a=0 c*
----------UCUGGCAUUGUUGUGAUGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=5 ma
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUCACGAUAGUGCCAGAAC--------- l=20 a=0 ma*

----------UCUGGCAUUGUUGUGAUGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=5 (c,ma)
----------UCUGGCAUUGUUGUGAUGAg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
----------UCUGGCAUUGUUGUGAUGAAc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111110111100
fn-101
